PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.5FE4Y
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 597aa    MW: 66397.7 Da    PI: 8.8938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.5FE4YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-11288346255
                  HHHHHHHHHHHHHHHHHH.........HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsa.........feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h++ E+rRR++iN++         f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Aradu.5FE4Y 288 RSKHSATEQRRRSKINDRrvlpilhkiFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 346
                  889**************88888888889*********9....9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.7E-21283368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-14284367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8288346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-12288350No hitNo description
SMARTSM003531.8E-6292351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.064295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MMELPQARSF GTEGRKPTHD FLSLYSNSTS QQDPRPPSQG SYLKTHDFLR VETKANTKEE  60
ASDETSSTVQ KLPPAAPQPP PSVENHQHLL PGGIGTYSIS HISYFNNNNN NNNNNNNNNN  120
NNNNNNNNQR VPKPEAPLFT VRQATSTDRN DENSNCSSYT SSGFTLWDES AVKKGKTGKE  180
NNIVGDKLIP GETQSAKQGH WTSTEGTPQS FSNNRHNSFN SRSSSQTTGQ RNQSFIEMMK  240
SAKDCAQDEE LDNEETYFLK KESSNPERAE LRVKVDGKST DQKPNTPRSK HSATEQRRRS  300
KINDRRVLPI LHKIFQMLRE LIPHSDQKRD KASFLLEVIE YIHFLQEKVH KYEGSFQGWN  360
HEPEKLMPWR NNDKPAESFE ACGTNSGSGP SPTLLFASKI DEKNITLSPP ITGSSQKLEP  420
GLNTATPFKN MDHPPGITNT TFPIPISSPP NFFPPRKSIG LGEMPHVTHR LPSDAGNGIY  480
QPSVECQTVT ATNEKLKEKE LAIEGGAISI SSVYSKGLLD TLTHALQSSG VDLSQASISV  540
QIELRKQENI IRPTLPMSMC GIKGDEVPSN NQRMMRSRVA TSGKSDQPVK KLKSCKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015943836.10.0PREDICTED: transcription factor BIM1 isoform X1
RefseqXP_015943840.10.0PREDICTED: transcription factor BIM1 isoform X1
RefseqXP_015943848.10.0PREDICTED: transcription factor BIM1 isoform X1
TrEMBLA0A0B2QEC90.0A0A0B2QEC9_GLYSO; Transcription factor BIM1
STRINGGLYMA17G08980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-105bHLH family protein